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MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data
VTT Technical Research Centre of Finland, Espoo, Finland.
VTT Technical Research Centre of Finland, Espoo, Finland.
Turku Centre for Biotechnology, Turku, Finland.ORCID iD: 0000-0002-2856-9165
2006 (English)In: Bioinformatics, ISSN 1367-4803, E-ISSN 1367-4811, Vol. 22, no 5, p. 634-636Article in journal (Refereed) Published
Abstract [en]

Summary: New additional methods are presented for processing and visualizing mass spectrometry based molecular profile data, implemented as part of the recently introduced MZmine software. They include new features and extensions such as support for mzXML data format, capability to perform batch processing for large number of files, support for parallel processing, new methods for calculating peak areas using post-alignment peak picking algorithm and implementation of Sammon's mapping and curvilinear distance analysis for data visualization and exploratory analysis.

Avalibility: MZmine is available under GNU Public license from http://mzmine.sourceforge.net/.

Place, publisher, year, edition, pages
Oxford, United Kingdom: Oxford University Press, 2006. Vol. 22, no 5, p. 634-636
National Category
Medical and Health Sciences Bioinformatics (Computational Biology)
Identifiers
URN: urn:nbn:se:oru:diva-59349DOI: 10.1093/bioinformatics/btk039ISI: 000281442200001PubMedID: 16403790Scopus ID: 2-s2.0-77954772536OAI: oai:DiVA.org:oru-59349DiVA, id: diva2:1135854
Funder
EU, European Research Council, FP7-KBBE-222639
Note

Funding Agency: Okinawa Institute of Science and Technology Promotion Corporation

Available from: 2017-08-24 Created: 2017-08-24 Last updated: 2018-01-30Bibliographically approved

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Oresic, Matej

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