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COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Hinxton, Cambridge, United Kingdom; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Halle, Germany.
Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Halle, Germany.
Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
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2015 (English)In: Metabolomics, ISSN 1573-3882, E-ISSN 1573-3890, Vol. 11, no 6, p. 1587-1597Article in journal (Refereed) Published
Abstract [en]

Metabolomics has become a crucial phenotyping technique in a range of research fields including medicine, the life sciences, biotechnology and the environmental sciences. This necessitates the transfer of experimental information between research groups, as well as potentially to publishers and funders. After the initial efforts of the metabolomics standards initiative, minimum reporting standards were proposed which included the concepts for metabolomics databases. Built by the community, standards and infrastructure for metabolomics are still needed to allow storage, exchange, comparison and re-utilization of metabolomics data. The Framework Programme 7 EU Initiative 'coordination of standards in metabolomics' (COSMOS) is developing a robust data infrastructure and exchange standards for metabolomics data and metadata. This is to support workflows for a broad range of metabolomics applications within the European metabolomics community and the wider metabolomics and biomedical communities' participation. Here we announce our concepts and efforts asking for re-engagement of the metabolomics community, academics and industry, journal publishers, software and hardware vendors, as well as those interested in standardisation worldwide (addressing missing metabolomics ontologies, complex-metadata capturing and XML based open source data exchange format), to join and work towards updating and implementing metabolomics standards.

Place, publisher, year, edition, pages
Springer-Verlag New York, 2015. Vol. 11, no 6, p. 1587-1597
Keywords [en]
Coordination and data sharing community, Data exchange, Data standards, Metabolomics, Metabonomics, e-Infrastructure
National Category
Bioinformatics (Computational Biology) Biomedical Laboratory Science/Technology
Identifiers
URN: urn:nbn:se:oru:diva-63706DOI: 10.1007/s11306-015-0810-yISI: 000363040600010PubMedID: 26491418Scopus ID: 2-s2.0-84944278465OAI: oai:DiVA.org:oru-63706DiVA, id: diva2:1169271
Note

Funding agencies:

European Commission EC312941 

Available from: 2017-12-22 Created: 2017-12-22 Last updated: 2018-07-09Bibliographically approved

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Oresic, Matej

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