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Etiology of Central Nervous System Infections in a Rural Area of Nepal Using Molecular Approaches
Örebro University, School of Medical Sciences. Department of Infectious Diseases.ORCID iD: 0000-0003-1999-3383
Department of Laboratory Medicine, Clinical Microbiology, Faculty of Medicine and Health, Örebro University, Örebro, Sweden.
Department of Laboratory Medicine, Clinical Microbiology, Faculty of Medicine and Health, Örebro University, Örebro, Sweden.
United Mission Hospital Tansen, Tansen, Nepal.
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2019 (English)In: American Journal of Tropical Medicine and Hygiene, ISSN 0002-9637, E-ISSN 1476-1645, Vol. 101, no 1, p. 253-259Article in journal (Refereed) Published
Abstract [en]

The etiology of infections of the central nervous system (CNS) in Nepal often remains unrecognized because of underdeveloped laboratory facilities. The aim of this study was to investigate the etiology of CNS infections in a rural area of Nepal using molecular methods. From November 2014 to February 2016, cerebrospinal fluid (CSF) was collected from 176 consecutive patients presenting at United Mission Hospital in Tansen, Nepal, with symptoms of possible CNS infection. After the CSF samples were stored and transported frozen, polymerase chain reaction (PCR) was performed in Sweden, targeting a total of 26 pathogens using the FilmArray® ME panel (BioFire, bioMerieux, Salt Lake City, UT), the MeningoFinder® 2SMART (PathoFinder, Maastricht, The Netherlands), and an in-house PCR test for dengue virus (DENV), Japanese encephalitis virus (JEV), and Nipah virus (NiV). The etiology could be determined in 23%. The bacteria detected were Haemophilus influenzae (n = 5), Streptococcus pneumoniae (n = 4), and Neisseria meningitidis (n = 1). The most common virus was enterovirus detected in eight samples, all during the monsoon season. Other viruses detected were cytomegalovirus (n = 6), varicella zoster virus (n = 5), Epstein-Barr virus (n = 3), herpes simplex virus (HSV) type 1 (HSV-1) (n = 3), HSV-2 (n = 3), human herpes virus (HHV) type 6 (HHV-6) (n = 3), and HHV-7 (n = 2). Cryptococcus neoformans/gatti was found in four samples. None of the samples were positive for DENV, JEV, or NiV. Of the patients, 67% had been exposed to antibiotics before lumbar puncture. In conclusion, the etiology could not be found in 77% of the samples, indicating that the commercial PCR panels used are not suitable in this setting. Future studies on the etiology of CNS infections in Nepal could include metagenomic techniques.

Place, publisher, year, edition, pages
HighWire Press , 2019. Vol. 101, no 1, p. 253-259
National Category
Infectious Medicine
Identifiers
URN: urn:nbn:se:oru:diva-74617DOI: 10.4269/ajtmh.18-0434ISI: 000476680300040PubMedID: 31162021Scopus ID: 2-s2.0-85068911912OAI: oai:DiVA.org:oru-74617DiVA, id: diva2:1320796
Funder
Swedish Society of Medicine
Note

Funding Agencies:

Region Örebro County's Research Committe

Örebro University

Folke Nordbring Foundation

Available from: 2019-06-05 Created: 2019-06-05 Last updated: 2022-03-02Bibliographically approved
In thesis
1. Infections in the central nervous system with focus on meningococcal disease: clinical and epidemiological aspects
Open this publication in new window or tab >>Infections in the central nervous system with focus on meningococcal disease: clinical and epidemiological aspects
2022 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Infections in the central nervous system (CNS) include meningitis and encephalitis and are associated with high mortality and morbidity. A large number of different pathogens can cause these infections, including Neisseria meningitidis. It’s crucial to find the causative pathogen in order to provide the best treatment to the patient and for disease surveillance. 

In Paper I, molecular methods were used to investigate the microbial etiology in patients presenting with CNS infections at United Mission Hospital in Tansen, Nepal. Although the cerebrospinal fluid samples were analyzed for a large number of microbes using two commercial multiplex PCR panels and additional in-house real-time PCR, the etiology of the infections was still unknown in a large number of patients. This calls for further development of diagnostic methods for CNS infections.

Neisseria meningitidis, the meningococcus, is a strictly human commensal but also capable to cause severe disease, typically in the form of sepsis and meningitis. The aim of Paper II and III was to study the clinical presentation of N. meningitidis serogroup Y and W infections, which increased unexpectedlyin Sweden from 2007 and 2014, respectively. By reviewing medical records of these infection episodes, the conclusion was drawn that atypical presentations with respiratory and gastrointestinal symptoms were common, rather than meningitis and petechiae.

In Paper IV, meningococcal carriage was studied among students at Örebro University. Age ≤22 years, smoking, previous tonsillectomy, frequent partying and male gender were associated with higher carrier rates. The so far longest observation of carriage of the same meningococcal strain was presented, with a duration of at least one year.

In conclusion, the results from these studies highlight the importance of early detection of meningococcal infections with atypical presentations and the need of improved diagnostics for CNS infections

Place, publisher, year, edition, pages
Örebro: Örebro University, 2022. p. 122
Series
Örebro Studies in Medicine, ISSN 1652-4063 ; 256
Keywords
CNS infection, meningitis, encephalitis, Neisseria meningitidis, serogroup Y, serogroup W, meningococcal disease, carriage, PCR
National Category
General Practice
Identifiers
urn:nbn:se:oru:diva-96457 (URN)9789175294278 (ISBN)
Public defence
2022-03-25, Örebro universitet, Campus USÖ, hörsal C1, Södra Grev Rosengatan 32, Örebro, 09:00 (Swedish)
Opponent
Supervisors
Available from: 2022-01-14 Created: 2022-01-14 Last updated: 2023-04-14Bibliographically approved

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Säll, OlofSundqvist, Martin

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