Network analysis of human muscle adaptation to aging and contractionMRC-ARUK Centre for Musculoskeletal aging Research and National Institute of Health Research, Biomedical Research Centre, Royal Derby Hospital Centre, School of Medicine, University of Nottingham, Derby, UK.
MRC-ARUK Centre for Musculoskeletal aging Research and National Institute of Health Research, Biomedical Research Centre, Royal Derby Hospital Centre, School of Medicine, University of Nottingham, Derby, UK.
MRC-ARUK Centre for Musculoskeletal aging Research and National Institute of Health Research, Biomedical Research Centre, Royal Derby Hospital Centre, School of Medicine, University of Nottingham, Derby, UK.
Department of Surgery, Postgraduate Entry Medical School, Royal Derby Hospital Centre, School of Medicine, University of Nottingham, Derby, UK; Department of Surgery, Postgraduate Entry Medical School, Royal Derby Hospital Centre, School of Medicine, University of Nottingham, Derby, UK.
MRC-ARUK Centre for Musculoskeletal aging Research and National Institute of Health Research, Biomedical Research Centre, Royal Derby Hospital Centre, School of Medicine, University of Nottingham, Derby, UK.
MRC-ARUK Centre for Musculoskeletal aging Research and National Institute of Health Research, Biomedical Research Centre, Royal Derby Hospital Centre, School of Medicine, University of Nottingham, Derby, UK.
MRC-ARUK Centre for Musculoskeletal aging Research and National Institute of Health Research, Biomedical Research Centre, Royal Derby Hospital Centre, School of Medicine, University of Nottingham, Derby, UK.
MRC-ARUK Centre for Musculoskeletal aging Research and National Institute of Health Research, Biomedical Research Centre, Royal Derby Hospital Centre, School of Medicine, University of Nottingham, Derby, UK.
MRC-ARUK Centre for Musculoskeletal aging Research and National Institute of Health Research, Biomedical Research Centre, Royal Derby Hospital Centre, School of Medicine, University of Nottingham, Derby, UK.
Department of Sport and Health Sciences, College of Life and Environmental Sciences, University of Exeter, Exeter, UK.
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2020 (English)In: Aging, E-ISSN 1945-4589, Vol. 12, no 1, p. 740-755Article in journal (Refereed) Published
Abstract [en]
Resistance exercise (RE) remains a primary approach for minimising aging muscle decline. Understanding muscle adaptation to individual contractile components of RE (eccentric, concentric) might optimise RE-based intervention strategies. Herein, we employed a network-driven pipeline to identify putative molecular drivers of muscle aging and contraction mode responses. RNA-sequencing data was generated from young (21±1 y) and older (70±1 y) human skeletal muscle before and following acute unilateral concentric and contralateral eccentric contractions. Application of weighted gene co-expression network analysis identified 33 distinct gene clusters ('modules') with an expression profile regulated by aging, contraction and/or linked to muscle strength. These included two contraction 'responsive' modules (related to 'cell adhesion' and 'transcription factor' processes) that also correlated with the magnitude of post-exercise muscle strength decline. Module searches for 'hub' genes and enriched transcription factor binding sites established a refined set of candidate module-regulatory molecules (536 hub genes and 60 transcription factors) as possible contributors to muscle aging and/or contraction responses. Thus, network-driven analysis can identify new molecular candidates of functional relevance to muscle aging and contraction mode adaptations.
Place, publisher, year, edition, pages
Impact Journals LLC , 2020. Vol. 12, no 1, p. 740-755
Keywords [en]
Aging, candidate target discovery, contraction, network analysis, skeletal muscle
National Category
Geriatrics
Identifiers
URN: urn:nbn:se:oru:diva-78968DOI: 10.18632/aging.102653ISI: 000507233100042PubMedID: 31910159Scopus ID: 2-s2.0-85078574775OAI: oai:DiVA.org:oru-78968DiVA, id: diva2:1385572
Funder
Wellcome trust, WT105618MA
Note
Funding Agencies:
EPSRC/BBSRC Innovation Fellowship EP/S001352/1
Bournemouth University
Medical Research Council UK (MRC) MR/P021220/1 MR/K00414X/1
Arthritis Research UK via the MRC-ARUK Centre for Musculoskeletal Aging Research 19891
Biotechnology and Biological Sciences Research Council (BBSRC) BB/J014400/1 BB/M009122/1 BB/N015894/1
Swedish Research Council for Sport Science dnr 2016/125 dnr 2017/143
National Institute for Health Research, Nottingham Biomedical Research Centre
2020-01-142020-01-142024-07-04Bibliographically approved