A minigene approach for analysis of ATP7B splice variants in patients with Wilson disease☆Show others and affiliations
2009 (English)In: Biochimie, ISSN 0300-9084, E-ISSN 1638-6183, Vol. 91, no 10, p. 1342-1345Article in journal (Refereed) Published
Abstract [en]
Wilson disease (WND) is an autosomal recessive condition that results in accumulation of copper in the liver and brain when a membrane bound copper transporter, ATP7B, is defective. ATP7B is expressed in hepatic, brain and kidney cells, and a defect can lead to liver, neurological and renal damage in WND patients. Presentation is variable with a broad range of age of onset and symptoms, and not all biochemical signs used in diagnosis are found in every patient. Therefore, diagnosis by mutation analysis is particularly important. To date, there are approximately 380 probable disease-causing variants in ATP7B, 33 of which are splice site variants that are predicted to affect splicing, based on their location. Few of these splice site variants have been analyzed in vivo. Some exonic variations also have the potential to affect splicing. The aim of this project was to use minigenes for transcript analysis. We have chosen exon 8 as our focus and have cloned a wild-type three-exon minigene into a mammalian expression vector. After transfection, extracted RNA was analyzed by reverse transcription PCR and accurate splicing was detected. This minigene will facilitate the analysis of the numerous potential splice variants identified in exon 8 of ATP7B, with the advantage that patient cell lines are not required for each variant.
Place, publisher, year, edition, pages
Elsevier, 2009. Vol. 91, no 10, p. 1342-1345
Keywords [en]
Wilson disease, ATP7B, Splicing, Minigene, Variant analysis
National Category
Medical Genetics and Genomics
Research subject
Genetics; Medical Genetics; Molecular Biology
Identifiers
URN: urn:nbn:se:oru:diva-109983DOI: 10.1016/j.biochi.2009.06.008ISI: 000270636500026PubMedID: 19540904Scopus ID: 2-s2.0-69749090711OAI: oai:DiVA.org:oru-109983DiVA, id: diva2:1815999
Note
Funding Agencies:
The Canadian Institutes of Health Research
Queen Elizabeth II Master’s Award from the Government of Alberta
Graduate Research Assistantship from the University of Alberta Faculty of Medicine and Dentistry
2023-11-302023-11-302025-02-10Bibliographically approved