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Cell-TIMP: Cellular Trajectory Inference Based on Morphological Parameters
Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States.
Örebro University, School of Science and Technology. (Centre for Applied Autonomous Sensor Systems (AASS))ORCID iD: 0000-0001-9364-7994
Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States.
Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States; The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University, School of Medicine, Baltimore, Maryland 21205, United States; The Sidney Kimmel Comprehensive Cancer Center, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21287, United States.
2025 (English)In: Nano Letters, ISSN 1530-6984, E-ISSN 1530-6992Article in journal (Refereed) Epub ahead of print
Abstract [en]

Traditional approaches to studying cellular morphology rely on geometric metrics from stained images. However, staining processes can disrupt the cell's natural state and diminish accuracy due to photobleaching, while conventional analysis techniques, which categorize cells based on shape to discern pathophysiological conditions, often fail to capture the continuous and asynchronous nature of biological processes such as cell differentiation, immune responses, and cancer progression. In this work, we propose the use of quantitative phase imaging for morphological assessment due to its label-free nature. For analysis, we repurposed the genomic analysis toolbox to perform trajectory inference analysis purely based on morphology information. We applied the developed framework to study the progression of leukemia and breast cancer metastasis. Applying this framework to leukemia and breast cancer metastasis, we identified key shape changes linked to disease progression, highlighting the method's potential to enhance understanding of complex biological dynamics.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2025.
Keywords [en]
Cancer, Cellular morphology, Label-free imaging, Quantitative phase imaging
National Category
Cancer and Oncology
Identifiers
URN: urn:nbn:se:oru:diva-120890DOI: 10.1021/acs.nanolett.5c01009ISI: 001481082300001PubMedID: 40317256OAI: oai:DiVA.org:oru-120890DiVA, id: diva2:1956069
Note

We acknowledge support from the Air Force Office of Scientific Research (FA9550−22-1−0334) and National Institute of General Medical Sciences (1R35GM149272).

Available from: 2025-05-05 Created: 2025-05-05 Last updated: 2025-05-16Bibliographically approved

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Gupta, Himanshu

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