Open this publication in new window or tab >> Department of Clinical Microbiology, CHU Rennes University Hospital, Rennes, France.
Örebro University, School of Medical Sciences. Department of Laboratory Medicine, Faculty of Medicine and Health, Örebro University, Örebro, Sweden.
Institute of Medical Microbiology, University Hospital Münster, Münster, Germany.
Department of Microbiology, Hopital Universitaire de Bruxelles, ULB, Bruxelles, Belgium.
Service de Bactériologie et des Contrôles Microbiologiques, INSERM, CNRS, Immunology and New Concepts in ImmunoTherapy, INCIT, UMR 1302/EMR6001, Nantes Université, Univ Angers, CHU Nantes, Nantes, France.
Service de Bactériologie et des Contrôles Microbiologiques, INSERM, CNRS, Immunology and New Concepts in ImmunoTherapy, INCIT, UMR 1302/EMR6001, Nantes Université, Univ Angers, CHU Nantes, Nantes, France.
Genomic Research Laboratory, Service of Infectious Diseases, Geneva University Hospitals and Faculty of Medicine, Geneva, Switzerland.
Department of Microbiology and Hospital Hygiene, VBIC, INSERM U1047, Univ Montpellier, CHU Nîmes, Nîmes, France.
Department of Microbiology and Hospital Hygiene, VBIC, INSERM U1047, Univ Montpellier, CHU Nîmes, Nîmes, France.
Department of Microbiology and Hospital Hygiene, VBIC, INSERM U1047, Univ Montpellier, CHU Nîmes, Nîmes, France.
CIRI, Inserm U1111, Université Claude Bernard Lyon 1, CNRS UMR5308, ENS Lyon, Lyon, France.
European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group for Staphylococci and Staphylococcal Diseases (ESGS); Department of Microbiology and Hospital Hygiene, VBIC, INSERM U1047, Univ Montpellier, CHU Nîmes, Nîmes, France.
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2026 (English) In: Emerging Microbes & Infections, E-ISSN 2222-1751, Vol. 15, no 1, article id 2724635Article in journal (Refereed) Published
Abstract [en] Staphylococcus pettenkoferi has increasingly been reported as a human pathogen, with virulence potential recently confirmed in vivo. However, its genomic diversity and antimicrobial resistance remain insufficiently characterized. This study, conducted within the PETTENK-OS project of the ESCMID Study Group for Staphylococci and Staphylococcal Diseases (ESGS), aimed to characterize the genomic diversity and resistome of this underrecognized coagulase-negative staphylococcus (CoNS). Whole-genome sequencing was performed on 61 European clinical isolates (mainly bloodstream infections and osteomyelitis) from 17 hospitals in five countries, plus two reference strains. Antimicrobial susceptibility profiles were determined by disk diffusion and broth microdilution (2025 EUCAST breakpoints). Phylogenetic analyses clustered the 63 isolates into two major clades: Clade I (n = 51; subclades I-A, n = 47, and I-B, n = 4) and Clade II (subclades II-A, n = 8, and II-B, n = 3). Susceptibility rates were below 70% for cefoxitin, erythromycin, and levofloxacin, whereas high susceptibility (>90%) was observed for vancomycin, teicoplanin, dalbavancin, aminoglycosides, oxazolidinones, trimethoprim-sulfamethoxazole, fusidic acid, and tetracycline. Nearly all isolates (92.1%) were fosfomycin-resistant. Daptomycin MIC50/90 values (1/2 mg/L) were elevated, including eight resistant isolates carrying mutations in walKR, cls1, and/or cls2 genes. Twenty-two isolates (35.4%) were multidrug-resistant, and 18 (28.6%) were methicillin-resistant, all in subclade I-A and mecA-positive within SCCmec type IV. This study provides a comprehensive genomic and phenotypic assessment of antimicrobial resistance in S. pettenkoferi, revealing widespread multidrug-resistant lineages, including ceftobiprole- and daptomycin-resistant isolates across distinct clades. These findings underscore the need for continued surveillance and improved diagnostics for this increasingly encountered CoNS species.
Place, publisher, year, edition, pages
Nature Portfolio, 2026
Keywords Coagulase-negative staphylococci, methicillin resistance, molecular epidemiology, phylogenomics, whole genome sequencing
National Category
Infectious Medicine
Identifiers urn:nbn:se:oru:diva-131393 (URN) 10.1080/22221751.2026.2724635 (DOI) 001877972300001 () 42748359 (PubMedID)
Note Funding Agencies:
This work was funded by a grant from Nîmes University Hospital (Study Name: PETTENK-OS; Grant number: NIMAO 2-2023). The Micro&Bio platform (Nîmes University Hospital), which performed the whole-genome sequencing of the isolates was supported by a FEDER grant (Programme Occitanie FEDER-FSE+ 2021-2027; Grant number: 25014115).
2026-09-172026-09-172026-09-28 Bibliographically approved