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2026 (English)In: Laboratory Investigation, ISSN 0023-6837, E-ISSN 1530-0307, Vol. 106, no 3, article id 105647Article in journal, Meeting abstract (Other academic) Published
Abstract [en]
Background: The tumor immune microenvironment (TIME) plays a critical role in tumor progression, metastatic potential, and therapeutic response. Brightfield multiplex immunohistochemistry (BF-mIHC) is essential for in-depth TIME analysis, however, manual cell enumeration remains impractical for routine pathology. The contribution of Computer Vision is crucial for reliable TIME characterization, but the state of the art still lacks validated tools. In this study, we developed and validated a deep learning (DL) model for automated immune cell quantification in penile squamous cell carcinoma (PSCC) and non–small cell lung carcinoma (NSCLC).
Design: The study involves 13 slides of PSCC and 5 of NSCLC. Slides undergo BF-mIHC staining and digitization at ×20 (0.504 μm/pixel) by a Leica Aperio AT2 scanner. The BF-mIHC protocol stains CD4 in green, CD8 in DAB, CD163 (PSCC) and CD20 (NSCLC) in purple, CD68 in teal, FOXP3 (only PSCC) in yellow. Ten WSIs are randomly chosen for training the model and 8 are used for a blinded test. All WSIs are sampled in hotspot square patches (n.360) of 512×512 pixels. To generate a ground-truth dataset of stained cells, all patches are manually annotated by 2 expert pathologists. The 277 patches of the training WSIs are augmented by geometric and color transforms (1108 final patches). A multiclass U-Net with a ResNet-34 encoder is trained with a NVIDIA RTX3060 and validated using 20% of the patches. Final evaluation of performance is conducted on the 83 patches extracted from the 8 test WSIs.
Results: Training the DL model for 2000 epochs takes 60.19 hours. After training, the validation Dice score reaches 0.93. On the test subset, the DL model achieves both accuracy and specificity for background detection of 82%. Accuracy for chromogens is 87% for green, 97% for DAB, 98% for purple, and 99% for both teal and yellow. Sensitivity for chromogens is 81% for green, 85% for DAB, 77% for purple, 82% for teal, and 85% for yellow. Specificity for all chromogens is 99%. Computational time of automated detection and counting on new image patches (512×512 pixels) takes 2 seconds each.
Conclusions: This study develops a DL model validated for the automated characterization of the TIME in PSCC and NSCLC. This workflow enables a reproducible, objective, and high-throughput analysis of WSIs. The establishment of a robust and standardized tool for TIME profiling expands the clinical utility and translational relevance of BF-mIHC in diagnostic pathology.
Place, publisher, year, edition, pages
Elsevier, 2026
National Category
Cancer and Oncology
Identifiers
urn:nbn:se:oru:diva-128560 (URN)10.1016/j.labinv.2025.105647 (DOI)001744035300048 ()
Conference
115th Annual Meeting of the United-States-and-Canadian-Academy-of-Pathology (USCAP), San Antonio, TX, USA, March 21-26, 2026
2026-04-292026-04-292026-04-29Bibliographically approved