To Örebro University

oru.seÖrebro University Publications
Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
Transcriptomic analysis of nonylphenol effect on Saccharomyces cerevisiae
Department of Biomedical Engineering, Faculty of Engineering and Natural Sciences, Iskenderun Technical University, Hatay, Turkey.
Department of Bioengineering, Faculty of Engineering, Marmara University, Istanbul, Turkey.
Department of Bioengineering, Faculty of Engineering, Marmara University, Istanbul, Turkey.
Department of Bioengineering, Faculty of Engineering, Marmara University, Istanbul, Turkey.
Show others and affiliations
2021 (English)In: PeerJ, E-ISSN 2167-8359, Vol. 9, article id e10794Article in journal (Refereed) Published
Abstract [en]

Nonylphenol (NP) is a bioaccumulative environmental estrogen that is widely used as a nonionic surfactant. We have previously examined short-term effects of NP on yeast cells using microarray technology. In the present study, we investigated the adaptive response of Saccharomyces cerevisiae BY4742 cells to NP exposure by analyzing genome-wide transcriptional profiles using RNA-sequencing. We used 2 mg/L NP concentration for 40 days of exposure. Gene expression analysis showed that a total of 948 genes were differentially expressed. Of these, 834 genes were downregulated, while 114 genes were significantly upregulated. GO enrichment analysis revealed that 369 GO terms were significantly affected by NP exposure. Further analysis showed that many of the differentially expressed genes were associated with oxidative phosphorylation, iron and copper acquisition, autophagy, pleiotropic drug resistance and cell cycle progression related processes such as DNA and mismatch repair, chromosome segregation, spindle checkpoint activity, and kinetochore organization. Overall, these results provide considerable information and a comprehensive understanding of the adaptive response to NP exposure at the gene expression level.

Place, publisher, year, edition, pages
PeerJ Inc. , 2021. Vol. 9, article id e10794
Keywords [en]
Nonylphenol, RNA-seq, Saccharomyces cerevisiae, OXPHOS, Cell cycle process
National Category
Biochemistry Molecular Biology
Research subject
Molecular Biology
Identifiers
URN: urn:nbn:se:oru:diva-89787DOI: 10.7717/peerj.10794ISI: 000617037400006PubMedID: 33614281Scopus ID: 2-s2.0-85100755622OAI: oai:DiVA.org:oru-89787DiVA, id: diva2:1530102
Note

Funding Agencies:

Scientific and Technological Research Council of Turkey (TÜBİTAK, Grant No: 118Y311)

Marmara University Scientific Research Commission through project FEN-A-081117-0625

Available from: 2021-02-21 Created: 2021-02-21 Last updated: 2025-02-20Bibliographically approved

Open Access in DiVA

Transcriptomic analysis of nonylphenol effect on Saccharomyces cerevisiae(5514 kB)1122 downloads
File information
File name FULLTEXT01.pdfFile size 5514 kBChecksum SHA-512
34bf08c933e7c3d52f78878b1a3b96be7083ee48bd3a170099d3d6f603284ccc7dc917079a445cf0c0ef216bc01117d841d80f3d242e670e1f9fb5fc261d4be4
Type fulltextMimetype application/pdf

Other links

Publisher's full textPubMedScopus

Authority records

Pradhan, Ajay

Search in DiVA

By author/editor
Pradhan, Ajay
By organisation
School of Science and Technology
In the same journal
PeerJ
BiochemistryMolecular Biology

Search outside of DiVA

GoogleGoogle Scholar
Total: 1122 downloads
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

doi
pubmed
urn-nbn

Altmetric score

doi
pubmed
urn-nbn
Total: 1074 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf