Giraffe genome sequence reveals clues to its unique morphology and physiologyCenter for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Center for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA; MRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford OX1 3PT, UK.
Center for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA; Center for Public Health Genomics, Department of Computer Science, University of Virginia, Charlottesville, Virginia 22908, USA.
Center for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Center for Genomics and Bioinformatics, Department of Computer Science and Engineering, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Center for Genomics and Bioinformatics, Department of Computer Science and Engineering, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Center for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Center for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Nashville Zoo at Grassmere, Nashville, Tennessee 37211, USA.
White Oak Holdings, Yulee, Florida 32097, USA.
School of Life Sciences and Bioengineering, African Institute of Science and Technology, Arusha 4222, Tanzania; Center for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Show others and affiliations
2016 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 7, no 1, article id 11519Article in journal (Refereed) Published
Abstract [en]
The origins of giraffe's imposing stature and associated cardiovascular adaptations are unknown. Okapi, which lacks these unique features, is giraffe's closest relative and provides a useful comparison, to identify genetic variation underlying giraffe's long neck and cardiovascular system. The genomes of giraffe and okapi were sequenced, and through comparative analyses genes and pathways were identified that exhibit unique genetic changes and likely contribute to giraffe's unique features. Some of these genes are in the HOX, NOTCH and FGF signalling pathways, which regulate both skeletal and cardiovascular development, suggesting that giraffe's stature and cardiovascular adaptations evolved in parallel through changes in a small number of genes. Mitochondrial metabolism and volatile fatty acids transport genes are also evolutionarily diverged in giraffe and may be related to its unusual diet that includes toxic plants. Unexpectedly, substantial evolutionary changes have occurred in giraffe and okapi in double-strand break repair and centrosome functions.
Place, publisher, year, edition, pages
Springer Nature, 2016. Vol. 7, no 1, article id 11519
National Category
Medical Genetics and Genomics
Identifiers
URN: urn:nbn:se:oru:diva-118772DOI: 10.1038/ncomms11519ISI: 000375933500001PubMedID: 27187213Scopus ID: 2-s2.0-84968732783OAI: oai:DiVA.org:oru-118772DiVA, id: diva2:1930098
Note
Funding Agencies:
Eberly College of Science, Penn State University
Huck Institutes of Life Sciences, Penn State University
Nelson Mandela African Institute of Science and Technology, Tanzania
Biosciences Eastern and Central Africa-International Livestock Research Institute
Nashville Zoo, Nashville, TN
White Oak Holding
SEZARC
Tanzania Commission of Science and Technology, COSTECH, Tanzania
2025-01-222025-01-222025-01-23Bibliographically approved