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Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal‐transduction pathway
Department of Cell and Molecular Biology, University of Gothenburg, Göteborg, Sweden; The Systems Biology Institute, Tokyo, Japan.ORCID iD: 0000-0001-7843-8342
Department of Cell and Molecular Biology, University of Gothenburg, Göteborg, Sweden.
Department of Cell and Molecular Biology, University of Gothenburg, Göteborg, Sweden.
Department of Cell and Molecular Biology, University of Gothenburg, Göteborg, Sweden.
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2009 (English)In: Molecular Systems Biology, E-ISSN 1744-4292, Vol. 5, article id 281Article in journal (Refereed) Published
Abstract [en]

Cellular signalling networks integrate environmental stimuli with the information on cellular status. These networks must be robust against stochastic fluctuations in stimuli as well as in the amounts of signalling components. Here, we challenge the yeast HOG signal-transduction pathway with systematic perturbations in components' expression levels under various external conditions in search for nodes of fragility. We observe a substantially higher frequency of fragile nodes in this signal-transduction pathway than that has been observed for other cellular processes. These fragilities disperse without any clear pattern over biochemical functions or location in pathway topology and they are largely independent of pathway activation by external stimuli. However, the strongest toxicities are caused by pathway hyperactivation. In silico analysis highlights the impact of model structure on in silico robustness, and suggests complex formation and scaffolding as important contributors to the observed fragility patterns. Thus, in vivo robustness data can be used to discriminate and improve mathematical models.

Place, publisher, year, edition, pages
EMBO Press, 2009. Vol. 5, article id 281
Keywords [en]
gTow, HOG, robustness, signal transduction, systems biology
National Category
Cell and Molecular Biology
Identifiers
URN: urn:nbn:se:oru:diva-116603DOI: 10.1038/msb.2009.36ISI: 000267629300011PubMedID: 19536204Scopus ID: 2-s2.0-67650841319OAI: oai:DiVA.org:oru-116603DiVA, id: diva2:1904412
Funder
German Research Foundation (DFG)Swedish Research CouncilVinnova
Note

Funding:

MK was supported by JSPS as a postdoctoral fellow, and is currently financed by a repatriation grant from SSF. CW is supported by the IRTG 'Genomics and Systems Biology of Molecular Networks' from DFG. SH is supported by the Swedish Research Council, the 'Quantitative Biology' platform at GU and by the EC-funded 'QUASI' project. The collaboration between SH and HK is supported jointly by Vinnova and JST. AB is supported by the Swedish Research Council.

Available from: 2024-10-09 Created: 2024-10-09 Last updated: 2025-01-24Bibliographically approved

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